Visit our iCredits page to learn more about how to pre-purchase and allocate iCredits, view your balance, and receive important email notifications about your account. Renew existing subscriptions through MyIllumina Order Management or contact your sales or partner representative.
BaseSpace Sequence Hub
Data management and simplified bioinformatics for labs getting started and for rapidly scaling next-generation sequencing (NGS) operations.
Read More...
Data Analysis & Storage
Total:
*The 30-day free trial begins automatically when a user first creates an account and logs in. The trial grants users with 250 iCredits (which expire after 30 days) that can be applied to compute fees for any BaseSpace app and data storage above 1 TB. After the trial expires, the user can no longer run apps, but can continue to monitor sequencing runs, automatically demultiplex uploaded runs, store a limited amount of data, share & transfer with collaborators, and download data.
Product Highlights
As a key component of the BaseSpace Suite, BaseSpace Sequence Hub is a direct extension of your Illumina instruments. Encrypted data flow from the instrument into BaseSpace Sequence Hub, enabling you to manage and analyze your data easily with a curated set of analysis apps. BaseSpace Sequence Hub, powered by Amazon Web Services (AWS):
- Offers a security-first environment
- Enables you to set up runs and monitor instrument run quality
- Promotes efficiency by converting sequencing data to a standard format and streaming directly to the cloud
- Provides access to computing resources without the capital expenditure of in-house infrastructure
- Increases organizational productivity with easy access to a multitude of genomic analysis apps (provided by you, Illumina, or third parties)
Frequently Purchased Together
Key Features
Comprehensive security and privacy controls
BaseSpace Sequence Hub is a security-first platform that has been independently audited and certified for HIPAA compliance, ISO 27001, and ISO 13485. It is built to enable data privacy and compliance with GDPR principles and includes end-to-end encryption, auditing, and fine-grained access control.
Plug and play with tight instrument integration
Connect your instruments to BaseSpace Sequence Hub and take advantage of predictive instrument performance alerts, proactive service capabilities, run monitoring, real-time sequencing metrics, and run history. Access your run data anywhere, anytime.
Easy sharing and collaboration
BaseSpace Sequence Hub is designed to enable secure, audit-controlled collaboration among research groups. Data management and sharing capabilities, such as workgroups, allow you to share projects and runs securely with collaborators without requiring file downloads.
Simple push-button analysis and public and private analysis tools
BaseSpace Sequence Hub offers various push-button analysis solutions and version-controlled, ready-to-use workflows. It also supports simple, secure, and efficient pipeline configuration for personalized analysis workflows.
Advanced automation and integration
With BaseSpace Sequence Hub, you can use extensible APIs to integrate with your in-house informatics systems. Command-line and web browser-based tools help you interact with, manage, and analyze data easily.
Genomic Data Storage & Cloud Security
Securely store, process, and share large genomic and NGS datasets in the cloud with built-in speed and scalability. Learn more about cloud data security best practices.
Additional Features
Integrated Run Setup and Monitoring
Integration with all Illumina instruments means that users can set up runs and monitor them from anywhere.
Streamlined Data Management and Storage
Scale up or down depending upon your storage needs—all without burdening your IT department with hardware maintenance.
Simplified Data Analysis
Easily perform routine data analysis with a comprehensive library of apps available, including a robust suite of accurate, ultra-rapid DRAGEN secondary analysis pipelines.
Subscription Options
Basic |
Professional |
Enterprise |
|
|---|---|---|---|
| Included Storage | 1 TB | 1 TB | 1 TB |
| Complimentary iCredits | 250* iCredits | 500 iCredits | 500 iCredits |
| Payment Plans | n/a | Monthly Billing or Pre-paid iCredits | Monthly Billing or Pre-paid iCredits |
| Run Setup and Monitoring | |||
| FASTQ Generation | Free | Free | Free |
| Data Egress | Free | Free | Free |
| Data Sharing | |||
| Advanced Security & Compliance (Encryption, ISO 27001, ISO 27701, ISO 13485) | |||
| API and Command-line Access | |||
| Number of Users | One | Unlimited | Unlimited |
| Workgroups | One | Unlimited | |
| Premier Security (Private Domain, Single Sign-on**, Audit Trail, Access Control) | |||
| HIPAA BAA (US only) | |||
| Service Level Agreement |
* 250 iCredits expire after 30-day introductory trial.
** Available for systems with control software that support Universal Copy Service. Not available for all legacy systems.
Predicting Analysis Costs
How much does it cost to process 1 sample in BaseSpace?
| Application | Cost | Details |
|---|---|---|
| Human Whole-Genome Sequencing | 7 iCredits |
|
| Exome Sequencing | 2 iCredits |
|
| Cancer Panel | 2 iCredits |
|
| Transcriptome | 2 iCredits |
|
| Differential Expression | 1 iCredit |
|
| RNA Panel | 2 iCredits |
|
| 16S rRNA | 1-2 iCredits |
|
Featured Resources
BaseSpace Sequence Hub Informational Resources
Get access to a compilation of resources designed to help new users get started with BaseSpace Sequence Hub.
BaseSpace Data Sets
See sample data sets for various methods in BaseSpace Sequence Hub, or test apps of interest and evaluate results interactively.
Illumina Informatics Blog
Read about the latest informatics product releases, version updates, and feature highlights.
Use Cases
Making Informatics Easy for Helix
How Helix scaled rapidly into one of the largest human exome sequencing operations in the world using BaseSpace Sequence Hub.
Watch Video
Product Literature
The Many Benefits of BaseSpace Sequence Hub
Brochure | PDF < 1 MB
Build a secure and compliant genomic sequencing practice with BaseSpace™ Sequence Hub on AWS
Brochure | PDF < 1 MB
Enhance your genomic sequencing operations with BaseSpace™ Sequence Hub on AWS
Brochure | PDF < 1 MB
Basespace Sequencing Hub Apps Quick Guide
Brochure | PDF < 1 MB
Data Sheet | PDF | 5 versions
BaseSpace Sequence Hub security and privacy
White Paper | PDF < 1 MB
Application Note | PDF | 5 versions
Manuals and Support Information
Illumina DRAGEN Secondary Analysis
The Illumina DRAGEN Secondary Analysis provides accurate, comprehensive, and efficient analysis of next-generation sequencing data.
BaseSpace Variant Interpreter
BaseSpace Variant Interpreter allows scientists to rapidly identify biologically significant variants from human genomic data.
Illumina Connected Analytics
A secure genomic data platform to operationalize informatics and drive scientific insights.
Correlation Engine
Correlation Engine is an interactive omics knowledgebase that puts private omics data in biological context with highly curated public data.